This package allows you to build BIDS Apps using Snakemake. It offers:

* Flexible data grabbing with PyBIDS, configurable solely by config file entries
* Helper function for creating BIDS paths inside Snakemake workflows/rules
* Command-line invocation of snakemake workflows with BIDS App compliance
* Configurable argument parsing specified using the Snakemake workflow config
* Execution either as command-line BIDS apps or via snakemake executable

Full Documentation: here

Relevant papers: